Publications on the onion genetics and breeding

Havey, M.J. 1991. History of releases from the onion breeding program of the United States Department of Agriculture. Allium Improvement Newsletter 1:50-54.

Havey, M.J. 1993. A putative donor of S-cytoplasm and its distribution among open-pollinated populations of onion. Theor. Appl. Genet. 86:128-134.

Havey, M.J. 1993. Onion Breeding. In: Genetic Improvement of Vegetable Crops. Kalloo, G., and Berg, B. (eds.). Pergamon Press, Oxford. pp. 35-49.

Havey, M.J. 1993. Fusarium basal rot of onion. In: Compendium of Onion and Garlic Diseases. Schwartz, H., and K. Mohan (eds.). APS Press, Minneapolis. p. 10-11.

Havey, M.J. 1993. Estimation of outcrossing using house flies for fertile-by-fertile crosses in onion. Allium Improvement Newsletter 3:12-14.

Havey, M.J., and O.H. Bark. 1994. Molecular confirmation that sterile cytoplasm has been introduced into open-pollinated populations of Grano-type onion. J. Amer. Soc. Hort. Sci. 119:90-93.

Havey, M.J. 1994. The cytoplasms of sterile lines used to produce commercial hybrid-onion seed. Allium Improvement Newsletter 4:25-27.

Havey, M.J. 1995. Cytoplasmic determinations using the polymerase chain reaction to aid in the extraction of maintainer lines from open-pollinated populations of onion. Theor. Appl. Genet. 90:263-268.

Havey, M.J., R. Jones, and I. Miller. 1995. Rare Biparental Transmission of the Organellar Genomes in Onion. Allium Improvement Newsletter 5:7-9.

Havey, M.J., and W.T. Randle. 1996. Combining abilities for yield and bulb quality among long- and intermediate-day open-pollinated onion populations. J. Amer. Soc. Hort. Sci. 121:604-608.

Havey, M.J. 1996. A one-half brown and one-half black seeded phenotype in onion is not conditioned by the B locus. Allium Improvement Newsletter 6:4-7.

Havey, M.J. 1998. Molecular analyses and heterosis in the vegetables: Why you cannot breed them like maize. CSSA Spec. Publ. No. 25. American. Society of Agronomy. Madison, WI. p. 109-116.

Havey, M.J. 1999. Seed yield, floral morphology, and lack of male-fertility restoration of male-sterile onion (Allium cepa) populations possessing the cytoplasm of Allium galanthum. J. Amer. Soc. Hort. Sci. 124:626-629.

Cramer, C.S., and M.J. Havey. 1999. Morphological, biochemical, and molecular markers in onion. HortScience 34:589-593.

Havey, M.J. 1999. Advances in New Alliums. In: Perspectives on New Crops and New Uses. J. Janick (ed.). ASHS Press, Alexandria, VA. p. 374-378.

Havey, M.J. 1999. Vegetable cultivar descriptions for North America (List 25): Onion. HortScience 34:961-968.

Leite, D., C.R. Galmarini, and M.J. Havey. 1999. Cytoplasms of elite open-pollinated onions from Argentina and Brazil. Allium Improvement Newsletter 9:1-4.

Havey, M.J. 2000. Diversity among male-sterility-inducing and male-fertile cytoplasms of onion. Theor. Appl. Genet. 101:778-782.

Goldman, I.L., G. Schroeck, and M.J. Havey. 2000. History of public onion breeding programs and pedigree of public onion germplasm releases in the United States. Plant Breeding Reviews 20:67-103.

Villanueva-Mosqueda, E., J. Jiang, and M.J. Havey. 2000. GISH analysis reveals chromosome regions of Allium fistulosum among progenies from advanced backcrosses to Allium cepa. Allium Improvement Newsletter 10:6-9.

Villanueva-Mosqueda, E., and M.J. Havey. 2001. Genetic analyses of seed yield in onion. J. Amer. Soc. Hort. Sci. 126:575-578.

Havey, M.J. 2002. Genome Organization in Allium. In: Advances in Allium Science. H. D. Rabinowitch and L. Currah (eds.). CAB, Oxford (in press).

Havey, M.J. 2002. Vegetable cultivar descriptions for North America (List 26): Onion. HortScience 37:41-43.

Havey, M.J., M. Cantwell, M.G. Jones, R.W. Jones, N.E. Schmidt, J. Uhlig, J.F. Watson, and K.S. Yoo. 2002. Significant variation exists among laboratories measuring onion bulb quality traits. HortScience 37:1086-1087.

Bohanec, B., M. Jak_e, and M.J. Havey. 2003. Genetic analyses of gynogenetic haploid production in onion. J. Amer. Soc. Hort. Sci. 128:571-574.

Jak_e, M., M.J. Havey, and B. Bohanec. 2003. Chromosome doubling procedures of onion (Allium cepa L.) gynogenic embryos. Plant Cell Rep. 21:905-913.

 

Publications on mapping the onion nuclear genome

Bark, O.H., J.N. Corgan, and M.J. Havey. 1994. RFLP analysis of progeny from an interspecific hybrid between Allium fistulosum and Allium cepa. J. Amer. Soc. Hort. Sci. 119:1046-1049.

Bark, O.H., and M.J. Havey. 1995. Similarities and relationships among open-pollinated populations of the bulb onion as estimated by nuclear RFLPs. Theor. Appl. Genet. 90:607-614.

Bradeen, J.M., and M.J. Havey. 1995. Randomly amplified polymorphic DNA in bulb onion and its use to assess inbred integrity. J. Amer. Soc. Hort. Sci. 120:752-758.

Havey, M.J., J.J. King, J.M. Bradeen, and O. Bark. 1997. Molecular markers and mapping in bulb onion, a forgotten monocot. HortScience 31:1116-1118.

Havey, M.J. 1996. Identification and uses of genetic markers linked to plant disease-resistance genes. In: Introducao ao uso de marcadores moleculares em analise genetica. M.E. Ferreira and D. Grattapaglia (eds.). EMBRAPA/CENARGEM, Brasilia, Brazil.

Havey, M.J., J.J. King, J.M. Bradeen, O. Bark, and J.A. McCallum. 1997. Genetic mapping in onion: Insights about the evolution of a huge nuclear genome. Proceedings of the First Congress of the Genetics Society of Slovenia 1:55-57.

King, J.J., J.M. Bradeen, O. Bark, J.A. McCallum, and M.J. Havey. 1998. A low-density genetic map of onion reveals a role for tandem duplication in the evolution of an extremely large diploid genome. Theor. Appl. Genet. 96:52-62.

King, J.J., J.M. Bradeen, and M.J. Havey. 1998. Variability for RFLPs and relationships among elite commercial inbred and virtual hybrid populations of onion. J. Amer. Soc. Hort. Sci. 123:1034-1037.

Galmarini, C.R., I.L. Goldman, and M.J. Havey. 2001. Genetic analyses of correlated solids, flavor, and health-enhancing traits in onion (Allium cepa L.). Mol. Gen. Genomics 265:543-551.

McCallum, J., D. Leite, M. Pither-Joyce, and M.J. Havey. 2001. Expressed sequence markers for genetic analysis of bulb onion (Allium cepa). Theor. Appl. Genet. 103:979-991.

Gokce, A.F., J. McCallum, Y. Sato, and M.J. Havey. 2002. Molecular tagging of the Ms locus in onion. J. Amer. Soc. Hort. Sci. 127:576-582.

Gokce, A.F., and M.J. Havey. 2002. Linkage equilibrium among tightly linked RFLPs and the Ms locus in open-pollinated onion populations. J. Amer. Soc. Hort. Sci. 127:944-946.

Kuhl, J.C., F. Cheung, Q. Yuan, W. Martin, Y. Zewdie, J. McCallum, A. Catanach, P. Rutherford, K.C. Sink, M. Jenderek, J.P. Prince, C.D. Town, and M.J. Havey. 2004. A unique set of 11,008 onion (Allium cepa) ESTs reveals expressed sequence and genomic differences between monocot orders Asparagales and Poales. Plant Cell 16:114-125.

Publications on the Allium phylogenetics

Havey, M.J. 1991. Phylogenetic relationships between cultivated Allium species from restriction enzyme analysis of the chloroplast genome. Theor. Appl. Genet. 81:752-757.

Havey, M.J. 1991. Molecular characterization of the interspecific origin of viviparous onion. J. Hered. 82:501-503.

Havey, M.J. 1992. Molecular phylogenetics of cultivated and wild Alliums. In: The Genus Allium - Taxonomic Problems and Genetic Resources. P. Hanelt, K. Hammer, and H. Knüpffer (eds.). Buch-und Offsetdruck Lüders, Halberstadt, Germany. p. 125-127.

Havey, M.J. 1992. Restriction enzyme analysis of the nuclear 45s ribosomal DNA of six cultivated Alliums. Plant Syst. Evol. 181:45-55.

Havey, M.J. 1992. Restriction enzyme analysis of the chloroplast and nuclear 45s ribosomal DNA of Allium sections Cepa and Phyllodolon. Plant Syst. Evol. 183:17-31.

Havey, M.J. 1992. A viviparous Allium fistulosum. Allium Improvement Newsletter 2:13-14.

Havey, M.J., K. Mohan, H. Schwartz, and F. Crowe. 1994. The Cultivated Species of Allium. In: Compendium of Onion and Garlic Diseases. Schwartz, H., and K. Mohan (eds.). APS Press, Minneapolis. p. 1-6.

Bradeen, J.M., and M.J. Havey. 1995. Restriction fragment length polymorphisms reveal considerable nuclear divergence within a well defined maternal clade in Allium section Cepa (Alliaceae). Amer. J. Bot. 82:1455-1462.

Havey, M.J. 1995. Onion and Other Cultivated Alliums. In: Evolution of Crop Plants. Smartt, J. (ed.). Longman, London. pp. 344-350.

Havey, M.J., J.M. Bradeen, and O.H. Bark. 1997. Phylogenies in Allium section Cepa estimated by restriction-enzyme analyses of chloroplast and nuclear DNA. Acta Hort. 433:113-122.

Havey, M.J. 1997. On the origin and distribution of normal cytoplasm of onion. Gen. Res. Crop Evol. 44:307-313.

Havey, M.J., and D. Leite. 1999. Organellar DNA diversity among cultivated accessions of Allium ampeloprasum. J. Amer. Soc. Hort. Sci. 124:163-165.

Lilly, J.W., and M.J. Havey. 2001. Sequence analysis of a chloroplast intergenic spacer for phylogenetic estimates and a PCR-based polymorphism detecting mixtures of male-fertile and male-sterile cytoplasmic onion. Theor. Appl. Genet. 102:78-82.

 

Publications on mapping the cucumber genome

Kennard, W.K., K. Poetter, A. Dijkhuizen, V. Meglic, J.E. Staub, and M.J. Havey. 1994. Linkages among RFLP, RAPD, isozyme, disease resistance, and morphological markers in narrow and wide crosses of cucumber. Theor. Appl. Genet. 89:42-48.

Kennard, W.K., and M.J. Havey. 1995. Quantitative trait analysis of fruit quality in cucumber: QTL detection, confirmation, and comparison with mating-design variation. Theor. Appl. Genet. 91:53-61.

Havey, M.J.,. O. López-Buesa, and W.K. Kennard. 1995. Molecular Tagging of Virus-Resistance Genes in Cucumber. Proceedings of Cucurbitaceae '94: Evaluation and Enhancement of Cucubit Germplasm. G.E. Lester and J.R. Dunlap (eds). Gateway Publishing. p. 60-63.

Dijkhuizen, A., W.C. Kennard, M.J. Havey, and J.E. Staub. 1996. RFLP variability and genetic relationships in cultivated cucumber. Euphytica 90:79-87.

Park, Y.H., S. Sensoy, C. Wye, R. Antonise, J. Peleman, and M.J. Havey. 2000. A genetic map of cucumber composed of RAPDs, RFLPs, AFLP markers and loci conditioning resistance to papaya ringspot and zucchini yellow mosaic viruses. Genome 43:1003-1010.

 

Publications on organellar genetics

Havey, M.J. 1997. Predominant paternal transmission of the mitochondrial genome in cucumber. J. Hered. 88:232-235.

Havey, M.J., J. McCreight, B. Rhodes, and G. Taurick. 1998. Differential transmission of the cucurbit organellar genomes. Theor. Appl. Genet. 97:122-128.

Lilly, J.W., M.J. Havey, S. Jackson, and J. Jiang. 2001. Cytogenomic analyses reveal structural plasticity in the chloroplast genome of higher plants. Plant Cell 13:245-254 (Awarded "Best Paper in The Plant Cell" for the year 2001).

Lilly, J.W., and M.J. Havey. 2001. Short repetitive motifs contributed significantly to the huge mitochondrial genome of cucumber. Genetics 159:317-328.

Lilly, J.W., G. Bartoszewski, S. Malepszy, and M.J. Havey. 2001. A major deletion in the mitochondrial genome is transmitted with MSC phenotype of cucumber. Curr. Genet. 40:144-151.

Havey, M.J., J.W. Lilly, G. Bartoszewski, S. Malepszy. 2002. Cucumber: a model angiosperm for mitochondrial transformation? J. Applied Genetics 43:1-17.

Peterka, H., H. Budahn, O. Schrader, and M.J. Havey. 2002. Transfer of a male-sterility-inducing cytoplasm from onion to leek (Allium ampeloprasum). Theor. Appl. Genet. 105:173-181.

Bartoszewski, G., S. Malepszy, and M.J. Havey. 2004. Mosaic (MSC) cucumbers regenerated from independent cell cultures possess different mitochondrial rearrangements. Curr. Genet. 45:45-53.

 

Publications on potato

Kuhl, J.C., R.E. Hanneman, Jr., and M.J. Havey. 2001. Characterization and mapping of Rpi1, a late blight resistance locus from diploid (1EBN) Mexican Solanum pinnatisectum. Mol. Genet. Genomics 265:977-985.

Kuhl, J.C., M.J. Havey, and R.E. Hanneman, Jr. 2002. A genetic study of unilateral incompatibility between diploid (1EBN) Mexican species Solanum pinnatisectum and S. cardiophyllum subsp. cardiophyllum. Sexual Plant Reprod. (in press).

 

Germplasm Releases

Havey, M.J., J.A.G. Irwin, and D.P. Maxwell. 1989. Registration of WAPRS-4 alfalfa germplasm resistant to Phytophthora root rot. Crop Sci. 29:833.

Havey, M.J. 1998. Release of onion inbred lines B1717, B1828, and B2354. USDA, Beltsville, MD, and University of Wisconsin Agricultural Experiment Station.

Havey, M.J. 1998. Release of galanthum-cytoplasmic male-sterile onion populations. USDA, Beltsville, MD, and University of Wisconsin Agricultural Experiment Station.

 

Publications from previous lives

Havey, M.J., and K.J. Frey. 1978. Optimal sample sizes and number per plot and replicate number for seed weights in oats. Cereal Res. Comm. 6:113-122.

Havey, M.J., and C.R. Grau. 1985. Decline of established alfalfa in soils naturally infested with Phytophthora megasperma f. sp. medicaginis and level of correlation with a seedling assay. Plant Dis. 69:221-224.

Havey, M.J., and D.P. Maxwell. 1987. Inheritance of Phytophthora root rot resistance in two diploid alfalfa species. Crop Sci. 27:225-228.

Havey, M.J., D.P. Maxwell, and J.A.G. Irwin. 1987. Independent inheritance of genes conditioning resistance to Phytophthora root rot from diploid and tetraploid alfalfa. Crop Sci. 27:873-879.

Havey, M.J., and D.P. Maxwell. 1988. Transfer of disease resistance from diploid to tetraploid alfalfa using unreduced female gametes. Plant Disease 72:603-604.

Havey, M.J., J.C. Faria, D.P. Maxwell, and D.J. Hagedorn. 1988. Partial resistance to anthracnose in Brazilian land races of dry beans shows race specificity. Euphytica 39:167-174.

Havey, M.J., and F.J. Muehlbauer. 1989. Linkages between restriction fragment length, isozyme and morphological markers in lentil. Theor. Appl. Genet. 77:395-401.

Havey, M.J., and F.J. Muehlbauer. 1989. Variability for restriction fragment length polymorphisms and phylogenies in lentil. Theor. Appl. Genet. 77:839-843.

Smith, K.P., M.J. Havey, and J. Handelsman. 1993. Protection by Bacillus cereus of harvested cucumber fruit from cottony leak. Plant Dis. 77:139-142.